Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sapBPeptide transport protein (ABC superfamily, membrane); Function of homologous gene experimentally demonstrated in an other organism; transporter. (344 aa)    
Predicted Functional Partners:
sapA
Putative ABC transporter, periplasmic peptide-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 0.999
sapD
Peptide transport protein (ABC superfamily, atp_bind); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
  
 0.999
sapC
Peptide transport protein (ABC superfamily, membrane); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  0.998
sapF
Peptide transport protein (ABC superfamily, atp_bind); Function of homologous gene experimentally demonstrated in an other organism; transporter.
     0.988
pspF
Transcriptional activator of phage shock proteins (EBP family); Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
    0.801
pspA-2
Negative regulatory gene for the psp opreon, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.676
pspC-2
Transcriptional activator of the psp operon with PspB, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.635
pspB
Regulatory gene for expression of the psp operon with PspC, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.635
PSHAa2045
Homologs of previously reported genes of unknown function.
       0.613
PSHAa2046
Conserved protein of unknown function, with nucleotide triphosphate hydrolase domain; Homologs of previously reported genes of unknown function.
       0.613
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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