Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sapCPeptide transport protein (ABC superfamily, membrane); Function of homologous gene experimentally demonstrated in an other organism; transporter. (297 aa)    
Predicted Functional Partners:
sapF
Peptide transport protein (ABC superfamily, atp_bind); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.999
sapB
Peptide transport protein (ABC superfamily, membrane); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  0.998
sapD
Peptide transport protein (ABC superfamily, atp_bind); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
  
 0.998
sapA
Putative ABC transporter, periplasmic peptide-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 0.987
PSHAa1879
Putative Lipoprotein releasing system ATP-binding component of ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
      0.898
fbpC
Iron(III) ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
    
 0.885
pspF
Transcriptional activator of phage shock proteins (EBP family); Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.798
lolD
Transport protein of inner membrane lipoproteins (ABC superfamily, ATP-binding); Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
      0.789
fhuC
Putative Iron-compound ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
     0.701
pspA-2
Negative regulatory gene for the psp opreon, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.676
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.