Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hsdSPutative type I restriction-modification system, S subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (442 aa)    
Predicted Functional Partners:
hsdM
Putative type I restriction-modification system, M subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
 0.999
hsdR
Putative type I restriction-modification system endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.993
PSHAa2092
Putative orphan protein; Doubtful CDS.
       0.773
PSHAa2090
Putative orphan protein; Doubtful CDS.
       0.565
PSHAa2822
Putative orphan protein; No homology to any previously reported sequences.
  
  
 0.520
PSHAa2089
Putative orphan protein; Doubtful CDS.
       0.506
PSHAa2095
Putative orphan protein; No homology to any previously reported sequences.
       0.482
atpF
Membrane-bound ATP synthase, F0 sector, subunit b; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 
 0.425
PSHAa2088
Putative orphan protein; No homology to any previously reported sequences.
       0.405
polA
Multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.401
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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