Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hsdMPutative type I restriction-modification system, M subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (684 aa)    
Predicted Functional Partners:
hsdS
Putative type I restriction-modification system, S subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
 0.999
hsdR
Putative type I restriction-modification system endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.996
PSHAa2092
Putative orphan protein; Doubtful CDS.
       0.773
uvrB
ATP-dependent DNA excision repair enzyme UvrAC; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA [...]
    
 
 0.570
PSHAa2090
Putative orphan protein; Doubtful CDS.
       0.565
PSHAa2095
Putative orphan protein; No homology to any previously reported sequences.
 
     0.558
guaA
GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP.
     
 0.526
PSHAa0406
Putative orphan protein; No homology to any previously reported sequences; membrane component.
   
    0.520
PSHAa2089
Putative orphan protein; Doubtful CDS.
       0.506
PSHAa1095
Putative orphan protein; No homology to any previously reported sequences.
  
  
 0.484
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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