Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PSHAa2095Putative orphan protein; No homology to any previously reported sequences. (361 aa)    
Predicted Functional Partners:
hsdM
Putative type I restriction-modification system, M subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.558
hsdR
Putative type I restriction-modification system endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.486
hsdS
Putative type I restriction-modification system, S subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.482
PSHAa2092
Putative orphan protein; Doubtful CDS.
       0.465
PSHAa2096
Putative orphan protein; Doubtful CDS.
       0.447
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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