STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
motYPutative Component of sodium-driven polar flagellar motor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein. (292 aa)    
Predicted Functional Partners:
motB-2
Sodium-driven polar flagellar protein; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
  
 
 0.912
fliF
Flagellar biosynthesis; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.911
fliL
Putative flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
 
 
 0.811
motB
Putative chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
 
 0.791
PSHAa0761
Homologs of previously reported genes of unknown function.
  
 
 
 0.784
rnt
RNase T, degrades tRNA, has exonuclease and ssDNAse activity; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
       0.779
PSHAa2312
Putative orphan protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
   0.769
tolB
Required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.738
PSHAa1833
Homologs of previously reported genes of unknown function.
  
  
 0.729
PSHAa0762
Homologs of previously reported genes of unknown function.
  
   
 0.702
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.