STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa2138Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (722 aa)    
Predicted Functional Partners:
PSHAb0158
Putative TonB-dependent receptor with TonB-box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.722
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
   
 0.667
TonB2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.647
teiR
LuxR-type transcription regulator required for testosterone degradation; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.620
PSHAb0524
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.594
PSHAa2149
Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
     0.572
PSHAa1415
Homologs of previously reported genes of unknown function; membrane component.
  
   
 0.552
PSHAa0528
Homologs of previously reported genes of unknown function; transporter.
 
   0.542
PSHAa0428
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
   
 0.541
tesA
TesA protein; Function of strongly homologous gene.
 
     0.539
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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