STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2147Putative taurine dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (308 aa)    
Predicted Functional Partners:
PSHAa2148
Putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.873
PSHAa2149
Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
   
 0.792
hisD
Bifunctional HisD: L-histidinal:NAD+ dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
      
 0.725
acnA
Aconitate hydratase (likely to be used in stationary phase); Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 
 0.643
PSHAa1718
Alanine dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the AlaDH/PNT family.
      
 0.512
PSHAa2767
Homologs of previously reported genes of unknown function.
  
  
 0.503
sucA
2-oxoglutarate dehydrogenase E1 component; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.485
PSHAa0884
Homologs of previously reported genes of unknown function.
  
    0.479
umuC
Component of DNA polymerase V with UmuD; Function of strongly homologous gene; enzyme.
      
 0.458
PSHAa2136
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.426
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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