STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2155Putative protein W (OmpW) family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (217 aa)    
Predicted Functional Partners:
hemN
Coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.856
PSHAa1843
Putative Cbb3-type cytochrome oxidase, cytochrome c subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
    0.780
PSHAa1842
Cytochrome c oxidase, cbb3-type, subunit I; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.666
PSHAa0246
Homologs of previously reported genes of unknown function; carrier.
 
    0.563
PSHAa1892
Putative iron-sulfur cluster-binding protein FixG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
    0.563
fnr
Transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.500
PSHAa2702
Cytochrome-c peroxidase; Function of strongly homologous gene; enzyme.
   
  
 0.497
PSHAa2154
Putative efflux pump; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.492
PSHAa0191
Homologs of previously reported genes of unknown function.
   
    0.481
yggW
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.454
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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