STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2161Homologs of previously reported genes of unknown function. (237 aa)    
Predicted Functional Partners:
bcsA
Cellulose synthase catalytic subunit [UDP-forming]; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
 
  
 0.963
PSHAa2163
Putative cyclic di-GMP binding protein, cellulose synthase regulator (BcsB); Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
  
 0.960
bcsZ
Endoglucanase precursor (Endo-1, 4-beta-glucanase) (Cellulase) (Carboxymethylcellulase) (CMCase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.957
bcsC
Cellulose synthase operon protein C; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.954
PSHAa2159
Putative protease BcsE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
 
 0.906
PSHAa2160
Putative orphan protein; No homology to any previously reported sequences.
       0.723
PSHAa0139
Homologs of previously reported genes of unknown function.
 
    0.649
parB
ParB family protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the ParB family.
  
 
 0.634
PSHAb0002
Putative transcriptional regulator for chromosome partitioning (parB family protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.634
PSHAa0389
Putative ampicillin resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.472
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.