Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
madNPutative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (284 aa)    
Predicted Functional Partners:
PSHAa2187
Homologs of previously reported genes of unknown function.
       0.644
PSHAa2185
Putative amidohydrolase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.533
PSHAa2188
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.494
dcp
Peptidyl-dipeptidase dcp (Dipeptidyl carboxypeptidase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.457
PSHAa2305
Putative orphan protein; No homology to any previously reported sequences.
  
     0.428
ygdE
RNA 2'-O-ribose methyltransferase, SAM-dependent domain; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
 
     0.407
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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