Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2187Homologs of previously reported genes of unknown function. (413 aa)    
Predicted Functional Partners:
PSHAa2483
Putative glycerophosphodiester phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
     
 0.926
glpF
Putative glycerol diffusion channel; Function of strongly homologous gene; transporter; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.913
PSHAa0373
Putative lysophospholipase L(2); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
    
 0.906
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.858
glpK-2
Putative glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.858
glpD
Sn-glycerol-3-phosphate dehydrogenase FAD binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.733
madN
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.644
PSHAa2188
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
  
 0.624
pstA
Putative phosphate transport system permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
  
 0.514
glpD-2
Putative oxygen-dependent membrane associated glycerol-3-phosphate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
 
 0.488
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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