STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2191Putative rhomboid family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (197 aa)    
Predicted Functional Partners:
PSHAa2190
Putative ThiJ/PfpI family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.631
PSHAa2192
Putative Glutathione S-transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.583
amiB
N-acetylmuramoyl-l-alanine amidase II, murein hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
   0.544
PSHAa0668
Putative carbon-nitrogen ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.463
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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