Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PSHAa2194Homologs of previously reported genes of unknown function; membrane component. (92 aa)    
Predicted Functional Partners:
PSHAa2193
Putative orphan protein; No homology to any previously reported sequences.
       0.764
apaH
Diadenosine tetraphosphatase (Ap4A hydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.519
kdkA
Putative lipopolysaccharide kinase family; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.467
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.463
PSHAa2197
Putative orphan protein; No homology to any previously reported sequences.
   
   0.460
PSHAa0336
Putative histone deacetylase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    
  0.452
PSHAa2198
Putative orphan protein; No homology to any previously reported sequences.
   
   0.452
PSHAa2226
Putative histone deacetylase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
    
  0.452
baeR
Transcriptional regulatory protein in two-component regulatory system with baeS; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.440
baeS
Putative sensory transduction histidine kinase in two-component regulatory system with baeR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
       0.440
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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