STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2194Homologs of previously reported genes of unknown function; membrane component. (92 aa)    
Predicted Functional Partners:
PSHAa2193
Putative orphan protein; No homology to any previously reported sequences.
       0.766
apaH
Diadenosine tetraphosphatase (Ap4A hydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.726
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.510
PSHAa2197
Putative orphan protein; No homology to any previously reported sequences.
   
   0.468
kdkA
Putative lipopolysaccharide kinase family; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.452
glpF
Putative glycerol diffusion channel; Function of strongly homologous gene; transporter; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.448
baeR
Transcriptional regulatory protein in two-component regulatory system with baeS; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.440
baeS
Putative sensory transduction histidine kinase in two-component regulatory system with baeR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
       0.440
PSHAa2198
Putative orphan protein; No homology to any previously reported sequences.
       0.440
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.427
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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