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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
baeSPutative sensory transduction histidine kinase in two-component regulatory system with baeR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor. (483 aa)    
Predicted Functional Partners:
baeR
Transcriptional regulatory protein in two-component regulatory system with baeS; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 0.997
PSHAa0654
Homologs of previously reported genes of unknown function.
 
 
0.909
PSHAa2621
Putative Sensory box sensor histidine kinase/response regulator; Function of strongly homologous gene; receptor.
 
 
0.881
PSHAa0861
Putative transcriptional regulatory protein RstA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.843
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
0.824
cusR
Two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.822
cpxR
Transcriptional regulatory protein CpxR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.813
rstA
Response regulator (activator) in two-component regulatory; Function of strongly homologous gene; regulator.
 
 0.810
phoP
Response regulator in two-component regulatory system with PhoQ; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.791
PSHAa2197
Putative orphan protein; No homology to any previously reported sequences.
  
    0.778
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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