STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2200Putative deoxyribodipyrimidine photolyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DNA photolyase family. (503 aa)    
Predicted Functional Partners:
ung
uracil-DNA-glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
 
      0.884
PSHAb0452
Homologs of previously reported genes of unknown function.
  
  
 0.861
PSHAa0994
Homologs of previously reported genes of unknown function.
 
   
 0.817
PSHAa2405
Homologs of previously reported genes of unknown function.
 
     0.651
PSHAa2199
Conserved protein of unknown function with domain typically associated with flavoprotein oxygenases; Homologs of previously reported genes of unknown function; enzyme.
 
     0.618
gor
Glutathione reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.572
PSHAa2201
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.548
bcd
Leucine dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
      
 0.535
osmC
Osmotically inducible protein C; Function of homologous gene experimentally demonstrated in an other organism; phenotype.
       0.482
PSHAb0311
Homologs of previously reported genes of unknown function.
 
   
 0.423
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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