STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
osmCOsmotically inducible protein C; Function of homologous gene experimentally demonstrated in an other organism; phenotype. (143 aa)    
Predicted Functional Partners:
osmY
Putative hyperosmotically inducible periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
   
  
 0.677
PSHAa2201
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.671
trxA
Thioredoxin 1, redox factor; Function experimentally demonstrated in the studied organism; enzyme; Belongs to the thioredoxin family.
   
  
 0.650
dps
Stress response DNA-binding protein Dps; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Belongs to the Dps family.
  
  
 0.586
dpsB
DNA-binding DPS protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the Dps family.
  
  
 0.586
PSHAa1854
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
   
    0.566
PSHAa1214
Conserved protein of unknown function, nucleotide triphosphate hydrolase domain; Homologs of previously reported genes of unknown function.
   
    0.562
PSHAa2218
Homologs of previously reported genes of unknown function; Belongs to the UPF0337 (CsbD) family.
  
  
 0.534
parE
DNA topoisomerase IV, subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
      
 0.510
PSHAa2200
Putative deoxyribodipyrimidine photolyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DNA photolyase family.
       0.482
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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