Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2203Homologs of previously reported genes of unknown function. (257 aa)    
Predicted Functional Partners:
PSHAb0167
Putative GGDEF sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.977
PSHAa2620
Putative two-component response regulator; Function of strongly homologous gene; regulator.
 
 
 
 0.927
PSHAb0077
Putative protein with GGDEF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    0.923
PSHAa2011
Homologs of previously reported genes of unknown function.
    0.900
PSHAa0644
Putative two-component response regulator with GGDEF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
    0.887
PSHAa1211
Homologs of previously reported genes of unknown function.
    0.882
PSHAa1157
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
 
 0.864
PSHAa1689
Homologs of previously reported genes of unknown function.
 
 
 
 0.863
PSHAb0273
Putative protein with GGDEF motif and GAF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    0.840
PSHAb0484
Putative GGDEF sensory box protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.
 
 
 0.807
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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