Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2210Putative orphan protein; No homology to any previously reported sequences. (446 aa)    
Predicted Functional Partners:
PSHAa2211
Homologs of previously reported genes of unknown function.
     0.960
PSHAa2209
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.551
PSHAa2212
Putative orphan protein; No homology to any previously reported sequences.
       0.509
PSHAa0537
Homologs of previously reported genes of unknown function.
   
    0.505
PSHAa0304
Putative cation efflux system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
    0.445
PSHAa2218
Homologs of previously reported genes of unknown function; Belongs to the UPF0337 (CsbD) family.
   
    0.435
PSHAb0414
Putative membrane associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.434
PSHAa1781
Putative polysaccharide export-related protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.424
PSHAb0553
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
    0.411
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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