Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa2218Homologs of previously reported genes of unknown function; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
osmY
Putative hyperosmotically inducible periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.920
PSHAa0537
Homologs of previously reported genes of unknown function.
  
    0.894
PSHAb0553
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
    0.730
ecfH
Homologs of previously reported genes of unknown function.
  
    0.593
PSHAa0536
Homologs of previously reported genes of unknown function.
  
    0.579
osmC
Osmotically inducible protein C; Function of homologous gene experimentally demonstrated in an other organism; phenotype.
  
  
 0.534
osmC-2
Putative organic hydroperoxide resistance protein; Function of strongly homologous gene; 12867437, 15103136.
  
  
 0.534
PSHAa0398
Putative polysaccharide export family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
   
    0.515
PSHAa1781
Putative polysaccharide export-related protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
    0.515
PSHAa1823
Homologs of previously reported genes of unknown function.
  
  
 0.452
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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