STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ampGPutative muropeptide transport protein (mFS family), highly conserved in gamma-proteobacteria; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (459 aa)    
Predicted Functional Partners:
ampD
N-acetyl-anhydromuramyl-L-alanine amidase; Function of strongly homologous gene; enzyme.
 
   
 0.885
anmK
Putative molecular chaperone; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
      
 0.848
rsmD
Ribosomal RNA large subunit methyltransferase G; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
  
    0.803
PSHAa2247
Putative Peptidylprolyl isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.800
PSHAa2246
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.796
mltD
Putative membrane-bound lytic murein transglycosylase D [Precursor]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
      
 0.758
mltD-2
Lytic murein transglycosylase C, membrane-bound; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.758
mltG
Conserved protein of unknown function; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
      
 0.729
PSHAa2244
Putative 2OG-Fe(II) oxygenase superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.722
bolA
Regulator protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the BolA/IbaG family.
       0.675
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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