STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2249Putative DNA binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy. (79 aa)    
Predicted Functional Partners:
PSHAa2367
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.640
PSHAb0363
Putative outer membrane porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.602
PSHAb0349
Putative TonB-dependent receptor protease/peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the peptidase M16 family.
  
     0.547
PSHAa0988
Homologs of previously reported genes of unknown function.
  
     0.541
PSHAa0453
Homologs of previously reported genes of unknown function; regulator.
  
 
 0.499
PSHAa1088
Homologs of previously reported genes of unknown function.
  
     0.496
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
  
   
 0.487
PSHAa0068
Putative serine secreted endoprotease, subtilase family; Function of strongly homologous gene; enzyme; Belongs to the peptidase S8 family.
  
   
 0.476
PSHAb0165
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.443
PSHAa2430
Putative orphan protein; No homology to any previously reported sequences.
  
     0.435
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.