Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2269Putative orphan protein; No homology to any previously reported sequences. (553 aa)    
Predicted Functional Partners:
PSHAa2268
Putative Fimh-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
     0.944
PSHAa2270
Putative orphan protein; No homology to any previously reported sequences.
       0.766
PSHAa2271
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.618
PSHAa0465
Homologs of previously reported genes of unknown function.
       0.512
PSHAa0137
Putative potassium channel; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.496
PSHAa2267
Putative ATPase and membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.483
PSHAa2266
Homologs of previously reported genes of unknown function; membrane component.
       0.473
PSHAa2198
Putative orphan protein; No homology to any previously reported sequences.
 
     0.455
PSHAa1567
Putative rhomboid family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.430
PSHAa2272
Homologs of previously reported genes of unknown function; membrane component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.412
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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