Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2295Putative methyltransferase SAM dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (224 aa)    
Predicted Functional Partners:
PSHAa2296
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.868
PSHAa2297
Putative ATP-binding component of ABC transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
       0.868
PSHAa2298
Putative aromatic acid decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.868
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (Murein peptide ligase); Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
  
    0.757
truB
tRNA pseudouridine 5S synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.635
truD
tRNA pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase); Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
 
 0.613
rsmF
Conserved protein of unknown function; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
  
 
 0.582
PSHAa1927
Homologs of previously reported genes of unknown function.
  
  
 0.574
yggH
tRNA (m7G46) methyltransferase, SAM-dependent; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
  0.540
rpmD
50S ribosomal subunit protein L30; Function of homologous gene experimentally demonstrated in an other organism; structural protein.
   
  
 0.533
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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