STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2297Putative ATP-binding component of ABC transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (309 aa)    
Predicted Functional Partners:
PSHAa2296
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 0.988
PSHAa2828
Putative ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
    
 0.899
PSHAa2295
Putative methyltransferase SAM dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.868
PSHAa2298
Putative aromatic acid decarboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.868
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (Murein peptide ligase); Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.757
PSHAa2841
ABC-type multidrug transport system, ATPase and permease component; Function of strongly homologous gene; transporter.
 
0.519
msbA
Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
0.501
sapF
Peptide transport protein (ABC superfamily, atp_bind); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
    
0.499
gshA
Glutamate--cysteine ligase (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
     0.487
gshA-2
Glutamate--cysteine ligase (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
     0.474
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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