Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2322Putative orphan protein; No homology to any previously reported sequences. (515 aa)    
Predicted Functional Partners:
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.696
PSHAb0414
Putative membrane associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
   
 0.637
PSHAa2320
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
  
 0.545
PSHAa2321
Putative orphan protein; No homology to any previously reported sequences.
       0.544
PSHAa2281
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.512
coaD
Phosphopantetheine adenylyltransferase (PPAT) (Dephospho-CoA pyrophosphorylase); Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.512
PSHAa2494
Putative orphan protein; No homology to any previously reported sequences.
 
     0.503
PSHAa0896
Putative very-long-chain acyl-CoA synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
    
 0.451
PSHAa1394
Putative long-chain-fatty-acid-CoA ligase; Function of strongly homologous gene; enzyme.
    
 0.451
PSHAa2132
Putative AMP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    
 0.451
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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