Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa2354Putative orphan protein; No homology to any previously reported sequences. (155 aa)    
Predicted Functional Partners:
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.860
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
 
 0.811
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
  
 
 0.807
PSHAa0654
Homologs of previously reported genes of unknown function.
  
 
 0.807
PSHAa2353
Putative orphan protein; No homology to any previously reported sequences.
       0.787
PSHAa2355
Putative nucleoside phosphorylase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.782
PSHAa0585
Putative Sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
 
 0.631
PSHAa2949
Putative sensor protein; Function of strongly homologous gene; receptor.
  
 
 0.631
PSHAa2352
Putative orphan protein; No homology to any previously reported sequences.
       0.623
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
  
 
 0.615
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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