Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2383Putative orphan protein; No homology to any previously reported sequences. (564 aa)    
Predicted Functional Partners:
PSHAa2382
Putative signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.675
PSHAa2915
Putative cold-active aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
   0.660
PSHAa0643
Homologs of previously reported genes of unknown function; enzyme.
  
 
  0.555
htpG
Chaperone protein htpG; Molecular chaperone. Has ATPase activity.
  
 0.530
PSHAa2902
Homologs of previously reported genes of unknown function; 11347268, 14672542.
    
 0.521
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.492
PSHAa2386
Dipeptidyl peptidase IV; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.490
PSHAb0473
Homologs of previously reported genes of unknown function.
  
     0.471
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.470
PSHAb0474
Homologs of previously reported genes of unknown function.
  
     0.470
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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