Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2405Homologs of previously reported genes of unknown function. (82 aa)    
Predicted Functional Partners:
PSHAa2200
Putative deoxyribodipyrimidine photolyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the DNA photolyase family.
 
     0.651
PSHAa0994
Homologs of previously reported genes of unknown function.
 
     0.634
PSHAb0310
Homologs of previously reported genes of unknown function.
 
     0.597
PSHAa2404
Putative orphan protein; No homology to any previously reported sequences.
       0.559
PSHAb0312
Homologs of previously reported genes of unknown function.
 
     0.558
PSHAa2403
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.528
PSHAa2406
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.506
PSHAa1260
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.449
PSHAa2494
Putative orphan protein; No homology to any previously reported sequences.
  
     0.435
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.