Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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Experiments
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[Homology]
Score
PSHAa2432Homologs of previously reported genes of unknown function. (83 aa)    
Predicted Functional Partners:
PSHAa2431
Putative transporter protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
     0.964
PSHAa2430
Putative orphan protein; No homology to any previously reported sequences.
 
     0.863
PSHAa0476
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
     0.792
PSHAa0505
Homologs of previously reported genes of unknown function.
  
     0.597
PSHAa2567
Putative Outer membrane porin; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
     0.551
PSHAa2433
Homologs of previously reported genes of unknown function.
       0.546
PSHAa2575
Homologs of previously reported genes of unknown function.
  
     0.523
thiDE
Putative phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
    0.493
PSHAb0363
Putative outer membrane porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.493
PSHAa1330
Putative D-alanyl-D-alanine carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.481
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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