Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2450Homologs of previously reported genes of unknown function. (128 aa)    
Predicted Functional Partners:
PSHAb0400
Putative acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
   
 0.722
PSHAb0393
Putative acyl carrier protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
     0.672
PSHAb0404
Putative membrane protein, Predicted exporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
     0.672
PSHAb0398
Putative protein with Glycosyl transferase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.660
PSHAb0396
Putative AMP-dependent synthetase and ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.654
PSHAb0391
Putative orphan protein; No homology to any previously reported sequences.
 
     0.651
PSHAa2451
Homologs of previously reported genes of unknown function.
       0.639
PSHAb0402
Putative protein with predicted thioesterase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.622
acpP-2
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
     0.611
PSHAb0392
Putative acyltransferase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.603
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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