Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dpsStress response DNA-binding protein Dps; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Belongs to the Dps family. (171 aa)    
Predicted Functional Partners:
clpS
Modulator of ClpA substrate specificity; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.872
sdaC
Putative serine transport protein (HAAAP family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
    
   0.739
PSHAa1214
Conserved protein of unknown function, nucleotide triphosphate hydrolase domain; Homologs of previously reported genes of unknown function.
   
    0.613
PSHAa1132
Trp repressor binding protein WrbA; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the WrbA family.
  
  
 0.599
osmC
Osmotically inducible protein C; Function of homologous gene experimentally demonstrated in an other organism; phenotype.
  
  
 0.586
osmC-2
Putative organic hydroperoxide resistance protein; Function of strongly homologous gene; 12867437, 15103136.
  
  
 0.581
bolA
Regulator protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the BolA/IbaG family.
   
  
 0.548
PSHAa1120
Homologs of previously reported genes of unknown function.
  
  
 0.542
PSHAa1559
Homologs of previously reported genes of unknown function.
   
    0.530
PSHAa0673
Putative ribosomal subunit interface protein, similar to protein Y; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.
   
    0.509
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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