Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2523Homologs of previously reported genes of unknown function; Belongs to the UPF0102 family. (123 aa)    
Predicted Functional Partners:
PSHAa2522
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
  
 0.867
PSHAa2524
Conserved protein of unknown function, highly conserved in gamma-proteobacteria; Homologs of previously reported genes of unknown function.
  
    0.847
ecfH
Homologs of previously reported genes of unknown function.
       0.816
rsmI
Putative methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.752
PSHAa2858
Homologs of previously reported genes of unknown function.
 
    0.669
yifB
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.668
smf
Homologs of previously reported genes of unknown function.
 
  
 0.555
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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