STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2540Putative anti-sigma B factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor. (97 aa)    
Predicted Functional Partners:
PSHAa2541
Putative ABC-type transport system, auxiliary component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 
 0.989
PSHAa2542
Putative transport protein (ABC superfamily, periplasmic binding component); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 0.986
PSHAa2544
Putative transport protein (ABC superfamily, atp-binding); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 0.975
PSHAa2543
Putative transport protein (ABC superfamily, membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 0.969
PSHAa1129
Putative transport protein (ABC superfamily, atp_bind and membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 
 0.913
PSHAa2539
Putative transcriptional regulator (BolA family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator; Belongs to the BolA/IbaG family.
       0.890
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.881
ptsN
PTS family enzyme IIA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.612
ksdD
D-arabinose 5-phosphate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.576
npr
Putative phosphocarrier protein NPr (HPr-like), nitrogen-related; Function of strongly homologous gene; carrier.
       0.548
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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