Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2541Putative ABC-type transport system, auxiliary component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (226 aa)    
Predicted Functional Partners:
PSHAa2542
Putative transport protein (ABC superfamily, periplasmic binding component); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 0.999
PSHAa2543
Putative transport protein (ABC superfamily, membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
 0.991
PSHAa2540
Putative anti-sigma B factor antagonist; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.
  
 
 0.990
PSHAa2544
Putative transport protein (ABC superfamily, atp-binding); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
 
 0.975
PSHAa2539
Putative transcriptional regulator (BolA family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator; Belongs to the BolA/IbaG family.
      0.948
PSHAa1129
Putative transport protein (ABC superfamily, atp_bind and membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
  
 
0.916
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.858
lptC
Conserved protein of unknown function; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
    0.828
vacJ
Lipoprotein precursor; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
 
 
 
 0.730
PSHAa1819
Homologs of previously reported genes of unknown function.
  
   
 0.719
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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