STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2550Putative transport protein (ABC superfamily, atp-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (241 aa)    
Predicted Functional Partners:
lptC
Conserved protein of unknown function; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
 
 0.997
PSHAa2421
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.993
PSHAa2422
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
 
 0.993
PSHAa2549
Homologs of previously reported genes of unknown function; transporter.
  
  
 0.984
ksdD
D-arabinose 5-phosphate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.960
kdsC
3-Deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
  
 0.941
PSHAa2545
Putative Na:Ca transport protein (CacA family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
     
 0.891
rpoN
Sigma N (sigma 54) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.839
PSHAa2552
Putative protein Y involved in control of translation at low temperature; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor.
  
  
 0.809
lpxA
Lipid A biosynthesis, UDP-N-acetylglucosamine acetyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.804
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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