Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fhuCPutative Iron-compound ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter. (270 aa)    
Predicted Functional Partners:
PSHAa2565
Putative Iron-compound ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
PSHAa2562
Putative ABC transporter, periplasmic substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
 
 0.994
hmuU
Hemin ABC-transport system permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.989
msbA
Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.924
PSHAa1879
Putative Lipoprotein releasing system ATP-binding component of ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
    
0.920
fbpC
Iron(III) ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
   
0.920
cydD
Cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); Function of homologous gene experimentally demonstrated in an other organism; regulator.
    
0.918
sapD
Peptide transport protein (ABC superfamily, atp_bind); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
    
0.914
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
    0.914
cydC
Cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   
0.906
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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