STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2579Putative transporter protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (323 aa)    
Predicted Functional Partners:
PSHAa2578
Homologs of previously reported genes of unknown function.
 
     0.757
rimK
Ribosomal protein S6 modification protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.715
PSHAa2576
Homologs of previously reported genes of unknown function.
 
     0.698
PSHAa0372
Putative transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
  
 0.650
cysG
Multifunctional siroheme synthase: uroporphyrinogen methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
    0.520
PSHAa0014
Conserved protein of unknown function, putative GTP-binding domain; Homologs of previously reported genes of unknown function.
  
    0.428
PSHAb0288
Putative cation efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
   
 0.407
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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