STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2612Homologs of previously reported genes of unknown function. (238 aa)    
Predicted Functional Partners:
PSHAa2614
Putative potassium channel protein; Function of strongly homologous gene; transporter.
       0.546
yfiQ
Putative acyl-CoA synthetase, NAD(P)-binding, ATP-binding; Function of strongly homologous gene; enzyme.
       0.543
fliG
Flagellar biosynthesis; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.456
flgG
Flagellar biosynthesis; Function of strongly homologous gene; structural protein; Belongs to the flagella basal body rod proteins family.
    
   0.420
PSHAa1210
Putative response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
    
   0.420
motB-2
Sodium-driven polar flagellar protein; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
  
 
   0.413
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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