STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2647Conserved protein of unknown function with GGDEF domain; Homologs of previously reported genes of unknown function. (368 aa)    
Predicted Functional Partners:
CheB
Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.941
PSHAa0134
Homologs of previously reported genes of unknown function.
 
 0.896
PSHAa1380
Homologs of previously reported genes of unknown function.
  
 0.866
PSHAb0191
Homologs of previously reported genes of unknown function; membrane component.
   
 0.834
PSHAa0456
Putative HAMP domain/GGDEF domain/EAL domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
   0.819
PSHAa2736
Homologs of previously reported genes of unknown function.
 
 0.811
PSHAa2203
Homologs of previously reported genes of unknown function.
  
 0.808
PSHAa2294
Putative orphan protein; No homology to any previously reported sequences; membrane component.
 
   0.797
PSHAa2767
Homologs of previously reported genes of unknown function.
 
 
 0.772
PSHAa1106
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
    0.743
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.