Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2649Serine protease precursor; Function of strongly homologous gene; enzyme. (711 aa)    
Predicted Functional Partners:
iscU
Fe-S assembly protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
      
 0.824
PSHAa1369
Homologs of previously reported genes of unknown function.
   
 
 0.783
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
     
 0.554
PSHAb0200
Putative secreted serine protease, subtilisin family, possibly excreted; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the peptidase S8 family.
 
  
0.537
kdsA
3-deoxy-D-manno-octulosonic acid 8-P synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the KdsA family.
      
 0.510
PSHAb0329
Putative unknown lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
 
 0.495
PSHAa2936
Homologs of previously reported genes of unknown function; enzyme.
  
     0.449
PSHAa0068
Putative serine secreted endoprotease, subtilase family; Function of strongly homologous gene; enzyme; Belongs to the peptidase S8 family.
  
   
 0.434
PSHAa2704
Homologs of previously reported genes of unknown function.
 
  
 0.417
PSHAa1452
Isovaleryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.405
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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