Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2660Homologs of previously reported genes of unknown function. (299 aa)    
Predicted Functional Partners:
fbpA
Iron(III) ABC transporter, periplasmic iron(III)-binding protein; Function of strongly homologous gene; transporter.
  
    0.806
fbpC
Iron(III) ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
  
    0.803
fbpB
Iron(III) ABC transporter, permease protein; Function of strongly homologous gene; transporter.
     
 0.802
PSHAa0503
Homologs of previously reported genes of unknown function.
  
  
 0.750
PSHAb0009
Putative copper resistance (CopC-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
  
 0.705
tyrA
Bifunctional protein [Includes: chorismate mutase T (N-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.549
PSHAa2664
Putative orphan protein; No homology to any previously reported sequences.
       0.533
rumA
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
 
      0.410
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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