STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2676Putative hydrolase, carbon-nitrogen family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (275 aa)    
Predicted Functional Partners:
tldD
Putative suppressor of CsrA inhibitory activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.893
mreD
Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
     
 0.849
PSHAa2677
Homologs of previously reported genes of unknown function.
      0.843
rng
RNase G (ribonuclease G); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.843
PSHAa2679
Conserved protein of unknown function with Maf/Ham1 domain; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.843
mreC
Putative rod shape-determining protein (partial); Involved in formation and maintenance of cell shape.
       0.791
mreB
Rod shape-determining protein; Function of homologous gene experimentally demonstrated in an other organism; structural protein.
       0.791
PSHAa2683
Homologs of previously reported genes of unknown function.
       0.719
speE
Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (SPDSY); Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
  
 0.629
trmJ
Putative tRNA/rRNA methyltransferase (trmH family); Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
       0.554
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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