Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rngRNase G (ribonuclease G); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (490 aa)    
Predicted Functional Partners:
PSHAa2679
Conserved protein of unknown function with Maf/Ham1 domain; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
    0.896
PSHAa2677
Homologs of previously reported genes of unknown function.
  
    0.868
mreD
Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
       0.868
pnp
Polynucleotide phosphorylase, has polyadenylase activity; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.865
tldD
Putative suppressor of CsrA inhibitory activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.813
PSHAa2676
Putative hydrolase, carbon-nitrogen family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.813
PSHAa2554
Conserved protein of unknown function; Displays ATPase and GTPase activities.
 
 
 
 0.812
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.
    
 
 0.799
mreC
Putative rod shape-determining protein (partial); Involved in formation and maintenance of cell shape.
       0.792
mreB
Rod shape-determining protein; Function of homologous gene experimentally demonstrated in an other organism; structural protein.
       0.792
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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