Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2683Homologs of previously reported genes of unknown function. (679 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein; Function of homologous gene experimentally demonstrated in an other organism; structural protein.
       0.727
PSHAa2677
Homologs of previously reported genes of unknown function.
       0.695
rng
RNase G (ribonuclease G); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.695
PSHAa2679
Conserved protein of unknown function with Maf/Ham1 domain; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.695
mreD
Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
       0.695
tldD
Putative suppressor of CsrA inhibitory activity; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.684
PSHAa2676
Putative hydrolase, carbon-nitrogen family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.669
dcyD
Putative D-cysteine desulfhydrase, PLP-dependent enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.661
mshD
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 11985966.
 
     0.589
mreC
Putative rod shape-determining protein (partial); Involved in formation and maintenance of cell shape.
       0.582
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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