Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gphPhosphoglycolate phosphatase, contains a phosphatase-like domain; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (221 aa)    
Predicted Functional Partners:
rpe
D-ribulose-5-phosphate 3-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.985
PSHAa1814
Putative phosphoglycolate phosphatase, contains a phosphatase-like domain; Function of strongly homologous gene; enzyme.
  
  
 
0.925
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.917
PSHAa2153
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.904
PSHAa2619
2-hydroxyacid dehydrogenase family protein; Function of strongly homologous gene; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.903
dam
DNA adenine methylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.637
ubiG
Bifunctional: 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
  
  
 0.485
PSHAa2711
Homologs of previously reported genes of unknown function.
       0.460
PSHAa2631
Homologs of previously reported genes of unknown function.
 
   
 0.443
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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