Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hemNCoproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (457 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.961
hemF
Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.951
PSHAa2253
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
    
 0.916
PSHAa2155
Putative protein W (OmpW) family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
  
 0.880
PSHAa1842
Cytochrome c oxidase, cbb3-type, subunit I; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.834
PSHAa1843
Putative Cbb3-type cytochrome oxidase, cytochrome c subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
  
 0.815
PSHAa1892
Putative iron-sulfur cluster-binding protein FixG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; carrier.
 
  
 0.753
PSHAa0246
Homologs of previously reported genes of unknown function; carrier.
 
  
 0.737
fnr
Transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.703
yegQ
Putative peptidase YegQ; Function of strongly homologous gene; enzyme.
 
    0.638
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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