STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2828Putative ABC transporter, permease protein; Function of strongly homologous gene; transporter. (412 aa)    
Predicted Functional Partners:
PSHAa2827
Putative ABC transporter, ATP-binding protein; Function of strongly homologous gene; enzyme.
 
 0.999
lolD
Transport protein of inner membrane lipoproteins (ABC superfamily, ATP-binding); Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.991
PSHAa0451
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
 0.985
PSHAa2826
Putative substate-binding protein involved in drug resistance; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.981
PSHAa1879
Putative Lipoprotein releasing system ATP-binding component of ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
     0.941
ftsE
Cell division protein (ABC transporteur superfamily, ATP_binding); Part of the ABC transporter FtsEX involved in cellular division.
   
 0.938
PSHAa2297
Putative ATP-binding component of ABC transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
    
 0.902
PSHAa2825
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.746
PSHAa2272
Homologs of previously reported genes of unknown function; membrane component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.671
PSHAa2832
Putative multidrug efflux system (AcrA/AcrE family); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.668
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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