STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2832Putative multidrug efflux system (AcrA/AcrE family); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (361 aa)    
Predicted Functional Partners:
PSHAa2833
Putative cation efflux system (AcrB/AcrD/AcrF family); Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.984
PSHAa2273
Putative acrB/acrD/acrF acriflavin resistance family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.816
PSHAa2835
Homologs of previously reported genes of unknown function.
 
     0.805
PSHAa2834
Transcriptional regulator, ArsR family; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.799
PSHAb0371
Similar to AcrAB-TolC efflux pump; Function of strongly homologous gene; membrane component.
 
   0.783
acrB
Putative multidrug efflux pump (RND family); Function of strongly homologous gene; transporter.
 
   0.768
PSHAb0486
Putative metabolite exporter, AcrB/D/F family; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.710
PSHAb0438
Putative metabolite exporter, AcrB/D/F family; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.702
PSHAa2828
Putative ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
 
 0.668
czcA
Cobalt-zinc-cadmium resistance protein czcA (Cation efflux system protein czcA); Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.636
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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