Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mipAPutative scaffolding protein for murein-synthesizing holoenzyme, outer membrane protein; Function of homologous gene experimentally demonstrated in an other organism; structural protein. (245 aa)    
Predicted Functional Partners:
PSHAa0863
Homologs of previously reported genes of unknown function.
  
     0.762
PSHAa0851
Homologs of previously reported genes of unknown function.
  
     0.676
PSHAa2837
Putative orphan protein; No homology to any previously reported sequences.
       0.493
ihfA
Integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
    0.451
msrB
Peptide methionine-R-sulfoxide reductase, MsrB protein (PilB protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
    0.417
PSHAa2617
Homologs of previously reported genes of unknown function.
  
     0.417
PSHAa2590
Homologs of previously reported genes of unknown function.
  
     0.410
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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